Interface for classes usable as a square matrix of characters. More...

Inheritance diagram for CharMatrix:

Public Member Functions
virtual unsigned int	numberOfSequences () const =0
	Gets number of rows or sequences. More...

virtual unsigned int	numberOfSites () const =0
	Gets number of columns or sites. More...

virtual char	character (unsigned int sequence, unsigned int site) const =0
	Gets the character at a given position. More...

virtual unsigned int	populationLabel (unsigned int row) const =0
	Gets population index. More...

virtual double	sitePosition (unsigned int column) const =0
	Get site position. More...

Detailed Description

Interface for classes usable as a square matrix of characters.

Member Function Documentation

pure virtual

Gets the character at a given position.

The accessor should be "fast" and does not guarantee to perform out-of-bounds checks

Implemented in Align, and DataMatrix.

virtual unsigned int numberOfSequences ( ) const

pure virtual

Gets number of rows or sequences.

Implemented in Align, and DataMatrix.

virtual unsigned int numberOfSites ( ) const

pure virtual

Gets number of columns or sites.

Implemented in Align, and DataMatrix.

virtual unsigned int populationLabel ( unsigned int row ) const

pure virtual

Gets population index.

Implemented in Align, and DataMatrix.

virtual double sitePosition ( unsigned int column ) const

pure virtual

Get site position.

Implemented in Align, and DataMatrix.

The documentation for this class was generated from the following file: