SitePolymorphism Member List

This is the complete list of members for SitePolymorphism, including all inherited members.

allele(unsigned int index) const	SitePolymorphism
alleleFrequency(unsigned int alleleIndex) const	SitePolymorphism
alleleFrequency(unsigned int popIndex, unsigned int alleleIndex) const	SitePolymorphism
clear() (defined in SitePolymorphism)	SitePolymorphism	protected
copy(const SitePolymorphism &site) (defined in SitePolymorphism)	SitePolymorphism	protected
derivedAlleleFrequency() const	SitePolymorphism
hasSpecificAllele(unsigned int popIndex, bool restrictToDerived) const (defined in SitePolymorphism)	SitePolymorphism
haveCommonAllele(unsigned int pop1, unsigned int pop2) const (defined in SitePolymorphism)	SitePolymorphism
haveFixedDifference(unsigned int pop1, unsigned int pop2) const (defined in SitePolymorphism)	SitePolymorphism
haveSharedAllele(unsigned int pop1, unsigned int pop2) const (defined in SitePolymorphism)	SitePolymorphism
init() (defined in SitePolymorphism)	SitePolymorphism	protected
isOrientable() const	SitePolymorphism
isPolymorphic(unsigned int popIndex) const (defined in SitePolymorphism)	SitePolymorphism
load(unsigned int populationIndex, char character)	SitePolymorphism
m_cache_orientable (defined in SitePolymorphism)	SitePolymorphism	protected
m_frequencies (defined in SitePolymorphism)	SitePolymorphism	protected
m_ns (defined in SitePolymorphism)	SitePolymorphism	protected
m_numberOfOutgroups (defined in SitePolymorphism)	SitePolymorphism	protected
m_numberOfPopulations (defined in SitePolymorphism)	SitePolymorphism	protected
m_numberOfStates (defined in SitePolymorphism)	SitePolymorphism	protected
m_outgroups (defined in SitePolymorphism)	SitePolymorphism	protected
m_pop_ns (defined in SitePolymorphism)	SitePolymorphism	protected
m_states (defined in SitePolymorphism)	SitePolymorphism	protected
ns() const	SitePolymorphism
ns(unsigned int popIndex) const	SitePolymorphism
numberOfAlleles() const	SitePolymorphism
numberOfPopulations(unsigned int npop)	SitePolymorphism
operator=(const SitePolymorphism &source)	SitePolymorphism
outgroup(char state)	SitePolymorphism
SitePolymorphism()	SitePolymorphism
SitePolymorphism(unsigned int npop)	SitePolymorphism
SitePolymorphism(const SitePolymorphism &source)	SitePolymorphism
~SitePolymorphism()	SitePolymorphism	virtual