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Egglib 2.1.11
C++ library reference manual
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This is the complete list of members for Align, including all inherited members.
| _ls (defined in Align) | Align | protected |
| _ns (defined in Container) | Container | protected |
| Align() | Align | |
| Align(unsigned int number_of_sequences, unsigned int alignment_length, char const *const *const cstring_array) | Align | |
| Align(unsigned int number_of_sequences, unsigned int alignment_length) | Align | |
| Align(const Align &align) | Align | |
| Align(const Container &container) | Align | |
| append(const char *name, const char *sequence, unsigned int group=0) | Align | virtual |
| appendSequence(unsigned int pos, const char *sequence) | Align | inlineprotectedvirtual |
| binSwitch(unsigned int pos) | Align | |
| character(unsigned int s, unsigned int p) const | Align | inlinevirtual |
| clear() | Align | virtual |
| Container() | Container | |
| Container(const Container &source) | Container | |
| Container(unsigned int number_of_sequences, char const *const *const cstring_array) | Container | |
| copyObject(const Container &) (defined in Align) | Align | protectedvirtual |
| copyObject(const Align &) (defined in Align) | Align | protectedvirtual |
| equalize(char ch='?') | Container | |
| find(const char *string, bool strict=true) const | Container | |
| get(unsigned int sequence, unsigned int position) const | Align | virtual |
| getNamesAndGroups(const Container &) (defined in Container) | Container | protectedvirtual |
| group(unsigned int pos, unsigned int group) | Container | virtual |
| group(unsigned int pos) const | Container | virtual |
| groups (defined in Container) | Container | protected |
| hslice(unsigned int a, unsigned int b) const | Container | |
| init() (defined in Align) | Align | protectedvirtual |
| isEqual() const | Container | |
| lnames (defined in Container) | Container | protected |
| ls() const | Align | virtual |
| ls(unsigned int pos) const | Align | virtual |
| name(unsigned int pos, const char *name) | Container | virtual |
| name(unsigned int pos) const | Container | virtual |
| names (defined in Container) | Container | protected |
| ns() const | Container | |
| numberOfSequences() const | Align | inlinevirtual |
| numberOfSites() const | Align | inlinevirtual |
| operator=(const Align &align) | Align | |
| operator=(const Container &container) | Align | |
| populationLabel(unsigned int sequenceIndex) const | Align | inlinevirtual |
| remove(unsigned int pos) | Align | virtual |
| removePosition(unsigned int pos) | Align | virtual |
| sequence(unsigned int seq, const char *sequence) | Align | virtual |
| sequence(unsigned int pos) const | Align | inlinevirtual |
| sequences (defined in Container) | Container | protected |
| set(unsigned int sequence, unsigned position, char ch) | Align | virtual |
| setFromSource(unsigned int number_of_sequences, unsigned int alignment_length, const char *const *const cstring_array) (defined in Align) | Align | protectedvirtual |
| setFromSource(unsigned int number_of_sequences, const char *const *const cstring_array) (defined in Container) | Container | protectedvirtual |
| sitePosition(unsigned int position) const | Align | inlinevirtual |
| vslice(std::vector< unsigned int > list_of_sites) | Align | |
| vslice(unsigned int a, unsigned int b) | Align | |
| ~Align() | Align | virtual |
| ~Container() | Container | virtual |
